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QuasR: Quantification and annotation of short reads in R

Gaidatzis, Dimos and Lerch, Anita and Hahne, Florian and Stadler, Michael (2015) QuasR: Quantification and annotation of short reads in R. QuasR: Quantification and annotation of short reads in R.

Abstract

QuasR is a package for the integrated analysis of high-throughput sequencing data in R, covering all steps from read preprocessing, alignment and quality control to quantification. QuasR supports different experiment types (including RNS-seq, ChIP-seq, and Bis-seq) and analysis variants (e.g. paired-end, stranded, spliced and allele-specific) and is integrated in Bioconductor so that its output can be directly processed for statistical analysis and visualization.

Item Type: Article
Keywords: Bioinformatics, Computational biology, Next-generation sequencing, Genomics, SNPs, Epigenetics
Date Deposited: 18 Nov 2015 00:45
Last Modified: 18 Nov 2015 00:45
URI: https://oak.novartis.com/id/eprint/24367

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